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Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Make the module reference tables appear
Our numpydoc is old enough to still need this manually set
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug: https://github.com/numpy/numpydoc/issues/141
Forwarded: not-needed
Gbp-Pq: Name sphinx_autosummary.patch
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Xfail or loosen tolerances on flaky tests
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>, Graham Inggs
Bug-Debian: https://bugs.debian.org/944054
Forwarded: partially https://github.com/statsmodels/statsmodels/pull/6222
Gbp-Pq: Name 944054_flaky_tests.patch
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Use same Python version for subprocess test
Avoids a fail due to mismatched extension .so version
when multiple Python 3 versions are available
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name subprocess_use_same_pyver.patch
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Don't try to write to the source directory
Not allowed in autopkgtest
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name use_tmp_path.patch
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Use Python 3 in script shebangs
(Skipping the two .pyx files with #!python - they need to be compiled
with Cython, not directly run with any version of plain Python)
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name python3_shebangs.patch
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Use scipy.special not scipy.misc
factorial, comb and logsumexp have been moved: trying to import them
from the old location is an error in scipy 1.3+.
https://ci.debian.net/data/autopkgtest/unstable/amd64/s/statsmodels/
2949940/log.gz
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: accepted https://github.com/statsmodels/statsmodels/pull/6164
Gbp-Pq: Name scipy13_compat.patch
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Loosen tolerances on some tests on i386
Failure log
https://buildd.debian.org/status/fetch.php?pkg=statsmodels&arch=i386&ver=0.9.0-3&stamp=
1567157609&raw=0
As it only fails on i386 (not x32) and isn't far over tolerance,
I suspect different rounding due to x87 excess precision
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/938949
Forwarded: no
Gbp-Pq: Name i386_loosen_test_tolerances.patch
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Warn that load_pickle() etc are for trusted data only
https://docs.python.org/3/library/pickle.html#restricting-globals
Author: Rebecca N. Palmer
Forwarded: https://github.com/statsmodels/statsmodels/pull/6162
Gbp-Pq: Name cache_security.patch
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Use example data from an R package we have
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name use_available_data.patch
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
KalmanFilter broken on armhf / hppa
Warn on use, and xfail the tests
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/924036
Bug-Ubuntu: https://launchpad.net/bugs/
1819227
Forwarded: no
Gbp-Pq: Name xfail_kalman_armhf.patch
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Give a more useful error if cvxopt is not found
message wasn't actually passed to anything, so it previously failed at
statsmodels/base/optimizer.py:13 (_check_method) with
"Unknown fit method l1_cvxopt_cp"
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: accepted https://github.com/statsmodels/statsmodels/pull/6163
Gbp-Pq: Name show_cvxopt_error.patch
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Change some more links to https
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: https://github.com/statsmodels/statsmodels/pull/5937
Gbp-Pq: Name link_security2.patch
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Don't fetch Twitter logo
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
Gbp-Pq: Name privacy.patch
Diane Trout [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Use intersphinx inventory files from other Debian packages.
Forwarded: not-needed
Gbp-Pq: Name use-system-inventory
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
to prevent failed test on i386
Author: Yaroslav Halchenko <debian@onerussian.com>
Bug: https://github.com/statsmodels/statsmodels/issues/1831
Forwarded: upstream consider this probably fixed
Gbp-Pq: Name up_reduce_test_precision
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Use cached datasets for building documentation/examples
Also remove a download that isn't actually used in that example.
This allows at least some of the examples to be built in an
offline environment such as a Debian buildd.
The cached data is extracted from R packages by debian/datasets/*.
Author: Diane Trout <diane@ghic.org>, Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed
Gbp-Pq: Name use-cached-datasets
Rebecca N. Palmer [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
statsmodels (0.10.2-2) unstable; urgency=medium
* Docs: don't fail the build on no-network exceptions. Closes: #950087.
* Remove #945501 cleanup code: not worth the risk in (future) stable.
* Bump Standards-Version to 4.5.0 (no changes needed).
* Include offset and exposure in GEE fittedvalues (upstream bug 5253).
[dgit import unpatched statsmodels 0.10.2-2]
Rebecca N. Palmer [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Import statsmodels_0.10.2-2.debian.tar.xz
[dgit import tarball statsmodels 0.10.2-2 statsmodels_0.10.2-2.debian.tar.xz]
Rebecca N. Palmer [Tue, 3 Dec 2019 21:23:04 +0000 (21:23 +0000)]
Import statsmodels_0.10.2.orig.tar.gz
[dgit import orig statsmodels_0.10.2.orig.tar.gz]