statsmodels.git
6 years agoMake the module reference tables appear
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Make the module reference tables appear

Our numpydoc is old enough to still need this manually set

Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug: https://github.com/numpy/numpydoc/issues/141
Forwarded: not-needed

Gbp-Pq: Name sphinx_autosummary.patch

6 years agoXfail or loosen tolerances on flaky tests
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Xfail or loosen tolerances on flaky tests

Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>, Graham Inggs
Bug-Debian: https://bugs.debian.org/944054
Forwarded: partially https://github.com/statsmodels/statsmodels/pull/6222

Gbp-Pq: Name 944054_flaky_tests.patch

6 years agoUse same Python version for subprocess test
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Use same Python version for subprocess test

Avoids a fail due to mismatched extension .so version
when multiple Python 3 versions are available

Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no

Gbp-Pq: Name subprocess_use_same_pyver.patch

6 years agoDon't try to write to the source directory
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Don't try to write to the source directory

Not allowed in autopkgtest

Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no

Gbp-Pq: Name use_tmp_path.patch

6 years agoUse Python 3 in script shebangs
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Use Python 3 in script shebangs

(Skipping the two .pyx files with #!python - they need to be compiled
with Cython, not directly run with any version of plain Python)

Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no

Gbp-Pq: Name python3_shebangs.patch

6 years agoUse scipy.special not scipy.misc
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Use scipy.special not scipy.misc

factorial, comb and logsumexp have been moved: trying to import them
from the old location is an error in scipy 1.3+.
https://ci.debian.net/data/autopkgtest/unstable/amd64/s/statsmodels/2949940/log.gz

Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: accepted https://github.com/statsmodels/statsmodels/pull/6164

Gbp-Pq: Name scipy13_compat.patch

6 years agoLoosen tolerances on some tests on i386
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Loosen tolerances on some tests on i386

Failure log
https://buildd.debian.org/status/fetch.php?pkg=statsmodels&arch=i386&ver=0.9.0-3&stamp=1567157609&raw=0

As it only fails on i386 (not x32) and isn't far over tolerance,
I suspect different rounding due to x87 excess precision

Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/938949
Forwarded: no

Gbp-Pq: Name i386_loosen_test_tolerances.patch

6 years agoWarn that load_pickle() etc are for trusted data only
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Warn that load_pickle() etc are for trusted data only

https://docs.python.org/3/library/pickle.html#restricting-globals

Author: Rebecca N. Palmer
Forwarded: https://github.com/statsmodels/statsmodels/pull/6162

Gbp-Pq: Name cache_security.patch

6 years agoUse example data from an R package we have
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Use example data from an R package we have

Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed

Gbp-Pq: Name use_available_data.patch

6 years agoKalmanFilter broken on armhf / hppa
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
KalmanFilter broken on armhf / hppa

Warn on use, and xfail the tests

Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Bug-Debian: https://bugs.debian.org/924036
Bug-Ubuntu: https://launchpad.net/bugs/1819227
Forwarded: no

Gbp-Pq: Name xfail_kalman_armhf.patch

6 years agoGive a more useful error if cvxopt is not found
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Give a more useful error if cvxopt is not found

message wasn't actually passed to anything, so it previously failed at
statsmodels/base/optimizer.py:13 (_check_method) with
"Unknown fit method l1_cvxopt_cp"

Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: accepted https://github.com/statsmodels/statsmodels/pull/6163

Gbp-Pq: Name show_cvxopt_error.patch

6 years agoChange some more links to https
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Change some more links to https

Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: https://github.com/statsmodels/statsmodels/pull/5937

Gbp-Pq: Name link_security2.patch

6 years agoDon't fetch Twitter logo
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Don't fetch Twitter logo

Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no

Gbp-Pq: Name privacy.patch

6 years agoUse intersphinx inventory files from other Debian packages.
Diane Trout [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Use intersphinx inventory files from other Debian packages.

Forwarded: not-needed

Gbp-Pq: Name use-system-inventory

6 years agoto prevent failed test on i386
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
to prevent failed test on i386

Author: Yaroslav Halchenko <debian@onerussian.com>
Bug: https://github.com/statsmodels/statsmodels/issues/1831
Forwarded: upstream consider this probably fixed

Gbp-Pq: Name up_reduce_test_precision

6 years agoUse cached datasets for building documentation/examples
Debian Science Maintainers [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Use cached datasets for building documentation/examples

Also remove a download that isn't actually used in that example.

This allows at least some of the examples to be built in an
offline environment such as a Debian buildd.

The cached data is extracted from R packages by debian/datasets/*.

Author: Diane Trout <diane@ghic.org>, Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: not-needed

Gbp-Pq: Name use-cached-datasets

6 years agostatsmodels (0.10.2-2) unstable; urgency=medium
Rebecca N. Palmer [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
statsmodels (0.10.2-2) unstable; urgency=medium

  * Docs: don't fail the build on no-network exceptions.  Closes: #950087.
  * Remove #945501 cleanup code: not worth the risk in (future) stable.
  * Bump Standards-Version to 4.5.0 (no changes needed).
  * Include offset and exposure in GEE fittedvalues (upstream bug 5253).

[dgit import unpatched statsmodels 0.10.2-2]

6 years agoImport statsmodels_0.10.2-2.debian.tar.xz
Rebecca N. Palmer [Tue, 28 Jan 2020 22:29:29 +0000 (22:29 +0000)]
Import statsmodels_0.10.2-2.debian.tar.xz

[dgit import tarball statsmodels 0.10.2-2 statsmodels_0.10.2-2.debian.tar.xz]

6 years agoImport statsmodels_0.10.2.orig.tar.gz
Rebecca N. Palmer [Tue, 3 Dec 2019 21:23:04 +0000 (21:23 +0000)]
Import statsmodels_0.10.2.orig.tar.gz

[dgit import orig statsmodels_0.10.2.orig.tar.gz]